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Status: Open.

#1153 In scverse/spatialdata;

· LucaMarconato opened on Jun 22, 2026

Missing values in AnnData .uns DataFrame become string "nan" after SpatialData Zarr round trip

Status: Open.

#1152 In scverse/spatialdata;

· AlbertoFabbri93 opened on Jun 22, 2026

Integration Testing CI Test Failure on python 3.14

Status: Open.

#1147 In scverse/spatialdata;

· scverse-issue-creator opened on Jun 18, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1148 In scverse/spatialdata;

· scverse-issue-creator opened on Jun 18, 2026

Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#1146 In scverse/spatialdata;

· scverse-issue-creator opened on Jun 18, 2026

Output spatially ordered anndata object

Status: Open.

#1145 In scverse/spatialdata;

· ilan-gold opened on Jun 17, 2026

Allow customization of suffix separator when concatenating SpatialData objects

Status: Open.

#1139 In scverse/spatialdata;

· AlbertoFabbri93 opened on May 29, 2026

Proseg v3 transcript dataframe issue

Status: Open.

#1137 In scverse/spatialdata;

· niklasmueboe opened on May 22, 2026

attributes/ome/omero/channels/label gets incorrectly coerced to integer

Status: Open.

#1136 In scverse/spatialdata;

· Bisaloo opened on May 21, 2026

Unable to save SpatialData object to zarr

Status: Open.

#1135 In scverse/spatialdata;

· npont opened on May 21, 2026

Lack of symmetry between shapes and points in on-disk format

Status: Open.

#1134 In scverse/spatialdata;

· Bisaloo opened on May 21, 2026

Clarify uniqueness of index for points and shapes

Status: Open.

#1130 In scverse/spatialdata;

· LucaMarconato opened on May 15, 2026