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Merge 14_workflow_retrieval_phase.ttl files #118

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344 changes: 344 additions & 0 deletions rocrate_validator/profiles/five-safes-crate/14_workflow_retrieval_phase.ttl
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# Copyright (c) 2025 eScience Lab, The University of Manchester
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

@prefix ro: <./> .
@prefix ro-crate: <https://github.com/crs4/rocrate-validator/profiles/ro-crate/> .
@prefix five-safes-crate: <https://github.com/eScienceLab/rocrate-validator/profiles/five-safes-crate/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix schema: <http://schema.org/> .
@prefix purl: <http://purl.org/dc/terms/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix validator: <https://github.com/crs4/rocrate-validator/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .


#=== MUST shapes ===#

five-safes-crate:DownloadActionObjectMUSTHavesDescriptiveName
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:targetClass schema:DownloadAction ;
sh:description "" ;

sh:property [
a sh:PropertyShape ;
sh:name "name" ;
sh:description "DownloadAction MUST have a human readable name string." ;
sh:path schema:name ;
sh:minCount 1 ;
sh:maxCount 1 ;
sh:datatype xsd:string ;
sh:severity sh:Violation ;
sh:message "DownloadAction MUST have a human readable name string." ;
] .



five-safes-crate:WorkflowSameAsAndRootDataEntityMainEntityMUSTBeTheSame
a sh:NodeShape ;
sh:name "Downloaded Workflow" ;
sh:description "" ;
sh:severity sh:Violation ;

sh:target [
a sh:SPARQLTarget ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT ?this
WHERE {
?this rdf:type schema:Dataset .
?s rdf:type schema:DownloadAction ;
schema:result ?this .
}
""" ;
];

sh:sparql [
a sh:SPARQLConstraint ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT $this
WHERE {
FILTER NOT EXISTS {
$this schema:sameAs ?o .
?s schema:mainEntity ?o .
# ?o rdf:type schema:Dataset .
}
}
""" ;

sh:description "The property `sameAs` of the entity representing the downloaded workflow MUST point to the same entity as `RootDataEntity` --> `mainEntity`." ;
sh:message "The property `sameAs` of the entity representing the downloaded workflow MUST point to the same entity as `RootDataEntity` --> `mainEntity`." ;
] .


five-safes-crate:DownloadedWorkflowDistributionAndDownloadActionObjectMUSTBeTheSame
a sh:NodeShape ;
sh:name "Downloaded Workflow" ;
sh:description "" ;
sh:severity sh:Violation ;

sh:target [
a sh:SPARQLTarget ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT ?this
WHERE {
?this rdf:type schema:Dataset .
?s rdf:type schema:DownloadAction ;
schema:result ?this .
}
""" ;
];

sh:sparql [
a sh:SPARQLConstraint ;
sh:name "" ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT $this
WHERE {
?action rdf:type schema:DownloadAction .
FILTER NOT EXISTS {
$this schema:distribution ?url .
?action schema:object ?url .
}
}
""" ;
sh:message "DownloadedWorkflow --> `distribution` MUST reference the same entity as `DownloadAction` --> `object`." ;
] .


five-safes-crate:DownloadActionActionStatusMUSTHaveAllowedValues
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:description "" ;

sh:target [
a sh:SPARQLTarget ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT ?this
WHERE {
?this rdf:type schema:DownloadAction ;
schema:actionStatus ?status .
}
""" ;
] ;

sh:property [
a sh:PropertyShape ;
sh:name "ActionStatus" ;
sh:path schema:actionStatus ;
sh:in (
"http://schema.org/PotentialActionStatus"
"http://schema.org/ActiveActionStatus"
"http://schema.org/CompletedActionStatus"
"http://schema.org/FailedActionStatus"
) ;
sh:severity sh:Violation ;
sh:message "The value of actionStatus MUST be one of the allowed values: PotentialActionStatus; ActiveActionStatus; CompletedActionStatus; FailedActionStatus." ;
] .


#=== SHOULD shapes ===#

five-safes-crate:DownloadActionEntitySHOULDExist
a sh:NodeShape ;
sh:name "RootDataEntity" ;
sh:description "" ;
sh:targetClass ro-crate:RootDataEntity ;
sh:severity sh:Warning ;

sh:sparql [
a sh:SPARQLConstraint ;
sh:name "" ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT $this
WHERE {
FILTER NOT EXISTS {
?s rdf:type schema:DownloadAction .
}
}
""" ;
sh:message "An entity typed DownloadAction SHOULD exist." ;
] .



five-safes-crate:RootDataEntitySHOULDMentionDownloadActionIfPresent
a sh:NodeShape ;
sh:name "RootDataEntity" ;
sh:description "" ;
sh:targetClass ro-crate:RootDataEntity ;
sh:severity sh:Warning ;

sh:sparql [
a sh:SPARQLConstraint ;
sh:name "" ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT $this ?da
WHERE {
?da rdf:type schema:DownloadAction .
FILTER NOT EXISTS {
$this schema:mentions ?da .
}
}
""" ;
sh:message "RootDataEntity SHOULD mention DownloadAction if this exists." ;
] .


five-safes-crate:DownloadActionShouldHaveEndTimeIfEnded
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:description "" ;
sh:target [
a sh:SPARQLTarget ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT ?this
WHERE {
?this rdf:type schema:DownloadAction ;
schema:actionStatus ?status .
FILTER(?status IN (
"http://schema.org/CompletedActionStatus",
"http://schema.org/FailedActionStatus"
))
}
""" ;
] ;

sh:property [
a sh:PropertyShape ;
sh:name "EndTime" ;
sh:path schema:endTime ;
sh:minCount 1 ;
sh:maxCount 1 ;
sh:severity sh:Warning ;
sh:message "`DownloadAction` SHOULD have the `endTime` property if `actionStatus` is either CompletedActionStatus or FailedActionStatus." ;
] .


five-safes-crate:DownloadActionShouldHaveActionStatus
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:targetClass schema:DownloadAction ;
sh:description "" ;

sh:property [
a sh:PropertyShape ;
sh:name "ActionStatus" ;
sh:path schema:actionStatus ;
sh:minCount 1 ;
sh:severity sh:Warning ;
sh:message "`DownloadAction` SHOULD have `actionStatus` property." ;
] .


#=== MAY shapes ===#

five-safes-crate:DownloadedWorkflowSHOULDExistAndBeReferencedByDownloadActionResult
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:description "Validates that DownloadAction result references an existing entity" ;
sh:targetClass schema:DownloadAction ;

sh:property [
a sh:PropertyShape ;
sh:name "Result" ;
sh:description "The result property must reference an existing entity in the RO-Crate" ;
sh:path schema:result ;
sh:minCount 1 ;
sh:nodeKind sh:IRI ;
sh:sparql [
a sh:SPARQLConstraint ;
sh:select """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX schema: <http://schema.org/>

SELECT $this $value
WHERE {
$this schema:result $value .

# Entity must have BOTH type AND name (proper definition)
FILTER NOT EXISTS {
$value rdf:type schema:Dataset .
}
}
""" ;
] ;
sh:severity sh:Info ;
sh:message "The entity representing the downloaded workflow is not defined, OR is not referenced by `DownloadAction` --> `result`, OR is not of type `Dataset`." ;
] .


five-safes-crate:DownloadActionMayHaveStartTimeIfBegun
a sh:NodeShape ;
sh:name "DownloadAction" ;
sh:description (
"`DownloadAction` MAY have the `startTime` property if `actionStatus` "
"is either ActiveActionStatus, CompletedActionStatus or FailedActionStatus."
);

sh:target [
a sh:SPARQLTarget ;
sh:select """
PREFIX schema: <http://schema.org/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>

SELECT ?this
WHERE {
?this rdf:type schema:DownloadAction ;
schema:actionStatus ?status .
FILTER(?status IN (
"http://schema.org/CompletedActionStatus",
"http://schema.org/FailedActionStatus",
"http://schema.org/ActiveActionStatus"
))
}
""" ;
] ;

sh:property [
a sh:PropertyShape ;
sh:name "StartTime" ;
sh:path schema:startTime ;
sh:minCount 1 ;
sh:maxCount 1 ;
sh:description (
"`DownloadAction` MAY have the `startTime` property if `actionStatus` "
"is either ActiveActionStatus, CompletedActionStatus or FailedActionStatus."
);
sh:severity sh:Info ;
sh:message "`DownloadAction` MAY have the `startTime` property if `actionStatus` is either ActiveActionStatus, CompletedActionStatus or FailedActionStatus." ;
] .
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