Skip manual AutoTEM#833
Merged
Merged
Conversation
…s and process them differently
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #833 +/- ##
==========================================
+ Coverage 53.09% 53.10% +0.01%
==========================================
Files 100 100
Lines 10842 10855 +13
Branches 1437 1439 +2
==========================================
+ Hits 5757 5765 +8
- Misses 4779 4783 +4
- Partials 306 307 +1 🚀 New features to boost your workflow:
|
tieneupin
added
bug
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
We have established that it is possible to use AutoTEM in manual mode and in full auto mode. The manual AutoTEM mode uses a different data structure and naming patterns, causing errors with our current file parsing logic, and will need to be handled differently.
This PR adds preliminary logic needed to distinguish between files originating from the auto or manual AutoTEM workflows, and will skip processing the file if it belongs to the manual AutoTEM workflow for now. Subsequent PRs will introduce logic to trigger processing and parse metadata correctly for the manual workflow.